Magazine Article
Band Aid sang 'feed the world' 40 years ago - where is hunger still an issue today?
Norman R (2024) Band Aid sang 'feed the world' 40 years ago - where is hunger still an issue today?. The Conversation. 27.11.2024. https://theconversation.com/band-aid-sang-feed-the-world-40-years-ago-where-is-hunger-still-an-issue-today-244564
Presentation / Talk
Predicting the impact of climate change on tick populations- a dynamic GIS approach
Norman R (2024) Predicting the impact of climate change on tick populations- a dynamic GIS approach. Royal Society Publishing Systems Biology Seminars, 01.11.2024. https://doi.org/10.52843/cassyni.dw8w3r
Article
COVID-19 in Scottish care homes: A metapopulation model of spread among residents and staff
Baister M, McTaggart E, McMenemy P, Megiddo I & Kleczkowski A (2024) COVID-19 in Scottish care homes: A metapopulation model of spread among residents and staff. Epidemics, 48, Art. No.: 100781. https://www.sciencedirect.com/science/article/pii/S1755436524000422; https://doi.org/10.1016/j.epidem.2024.100781
Article
Worton AJ, Norman RA, Gilbert L & Porter RB (2024) GIS-ODE: linking dynamic population models with GIS to predict pathogen vector abundance across a country under climate change scenarios. Journal of the Royal Society Interface, 21 (217). https://doi.org/10.1098/rsif.2024.0004
Article
McMenemy P, Kleczkowski A & Taylor NGH (2023) Modelling norovirus dynamics within oysters emphasises potential food safety issues associated with current testing & depuration protocols. Food Microbiology, 116, Art. No.: 104363. https://doi.org/10.1016/j.fm.2023.104363
Article
Trombetta E, Jakubiak S, Kutkova S, Lipschutz D, O'hare A & Enright JA (2023) A modeling study of the impact of treatment policies on the evolution of resistance in sea lice on salmon farms. PLoS ONE.
Article
Playing the political game: the coevolution of institutions with group size and political inequality
Powers ST, Perret C & Currie TE (2023) Playing the political game: the coevolution of institutions with group size and political inequality. Philosophical Transactions of the Royal Society B: Biological Sciences, 378 (1883). https://doi.org/10.1098/rstb.2022.0303
Research Report
Investigating Causal links from Observed Features in the first COVID-19 Waves in California
Good S & O'Hare A (2023) Investigating Causal links from Observed Features in the first COVID-19 Waves in California. ArXiv: Ithaca, New York. https://doi.org/10.48550/arXiv.2303.14485
Article
Perturbation responses in co-evolved model meta-communities
Abernethy G (2022) Perturbation responses in co-evolved model meta-communities. Ecology and Evolution, 12 (11), Art. No.: e9534. https://doi.org/10.1002/ece3.9534
Newspaper Article
Maths' missing millions could be answer to multiple modern problems
Norman R (2022) Maths' missing millions could be answer to multiple modern problems. Press and Journal. 28.09.2022.
Image
Emma + racket=a winning formula
Norman R (2022) Emma + racket=a winning formula [Maths+tennis]. [Newspaper article] 03.07.2022. https://www.pressreader.com/uk/sunday-express-1070/20220703/282114935271462
Review
A Quantitative Systems Pharmacology perspective on the importance of parameter identifiability
Sher A, Niederer SA, Mirams GR, Kirpichnikova A, Allen R, Pathmanathan P, Gavaghan DJ, Van Der Graaf PH & Noble D (2022) A Quantitative Systems Pharmacology perspective on the importance of parameter identifiability. Bulletin of Mathematical Biology, 84 (3), Art. No.: 39. https://doi.org/10.1007/s11538-021-00982-5
Conference Paper (published)
Effective use of evolutionary computation to parameterise an epidemiological model
Mitchell R, Cairns D, Hamami D, Pollock K & Shankland C (2021) Effective use of evolutionary computation to parameterise an epidemiological model. In: Cazzaniga P, Besozzi D, Merelli I & Manzoni L (eds.) Computational Intelligence Methods for Bioinformatics and Biostatistics. Lecture Notes in Computer Science, 12313. CIBB 2019: 16th International Conference on Computational Intelligence methods for Bioinformatics and Biostatistics, Bergamo, Italy, 04.09.2019-06.09.2019. Cham, Switzerland: Springer. https://doi.org/10.1007/978-3-030-63061-4_3
Conference Paper (published)
Monitoring water hyacinth in Kuttanad, India using Sentinel-1 SAR data
Simpson M, Marino A, Prabhu GN, Bhowmik D, Rupavatharam S, Datta A, Kleczkowski A, Sujeetha JARP & Maharaj S (2021) Monitoring water hyacinth in Kuttanad, India using Sentinel-1 SAR data. In: 2020 IEEE India Geoscience and Remote Sensing Symposium (InGARSS). IEEE International India Geoscience and Remote Sensing Symposium 2020 (InGARSS), Online, 02.12.2020-05.12.2020. Piscataway, NJ, USA: IEEE. https://doi.org/10.1109/InGARSS48198.2020.9358977
Conference Paper (published)
Akbari V, Simpson M, Maharaj S, Marino A, Bhowmik D, Prabhu GN, Rupavatharam S, Datta A, Kleczkowski A & Sujeetha JARP (2021) Monitoring Aquatic Weeds In Indian Wetlands Using Multitemporal Remote Sensing Data With Machine Learning Techniques. In: 2021 IEEE International Geoscience and Remote Sensing Symposium IGARSS. International Geoscience and Remote Sensing Symposium (IGARSS), Belgium, 12.07.2021-16.07.2021. Piscataway, NJ, USA: IEEE. https://doi.org/10.1109/IGARSS47720.2021.9553207
Article
O’Hare A, Balaz D, Wright DM, McCormick C, McDowell S, Trewby H, Skuce RA & Kao RR (2021) A new phylodynamic model of Mycobacterium bovis transmission in a multi-host system uncovers the role of the unobserved reservoir. PLOS Computational Biology, 17 (6), Art. No.: e1009005. https://doi.org/10.1371/journal.pcbi.1009005
Conference Paper (published)
Comparing a Game v. Non-Game approach for plant provenance public education
Docherty C, Rutherford A, Jones G & Maharaj S (2021) Comparing a Game v. Non-Game approach for plant provenance public education. In: Gabron S (ed.) GSGS '21 - International Conference on Gamification and Serious Game Proceeding. Gamification & Serious Game Symposium. GSGS '21 - International Conference on Gamification and Serious Game, Lausanne, Switzerland, 28.06.2021-09.07.2021. Dublin: Digital Kingdom. https://gsgs.ch/wp-content/uploads/2021/07/gsgs21.pdf
Review
Monitoring the spread of water hyacinth (Pontederia crassipes): challenges and future developments
Datta A, Maharaj S, Prabhu GN, Bhowmik D, Marino A, Akbari V, Rupavatharam S, Sujeetha JAR, Anantrao GG, Poduvattil VK, Kumar S & Kleczkowski A (2021) Monitoring the spread of water hyacinth (Pontederia crassipes): challenges and future developments. Frontiers in Ecology and Evolution, 9, Art. No.: 631338. https://doi.org/10.3389/fevo.2021.631338
Commentary
From Farm to Fork: growing a Scottish Food System that doesn't cost the Planet
Reay D, Warnatzsch EA, Craig E, Dawson L, George S, Norman R & Ritchie P (2020) From Farm to Fork: growing a Scottish Food System that doesn't cost the Planet. Frontiers in Sustainable Food Systems, 4, Art. No.: 72. https://doi.org/10.3389/fsufs.2020.00072
Article
How to get high resolution results from sparse and coarsely sampled data
Cuyt A & Lee W (2020) How to get high resolution results from sparse and coarsely sampled data. Applied and Computational Harmonic Analysis, 48 (3), pp. 1066-1087. https://doi.org/10.1016/j.acha.2018.10.001
Article
The Contact Structure of Great Britain's Salmon and Trout Aquaculture Industry
Jones AE, Munro LA, Green DM, Morgan KL, Murray AG, Norman R, Salama NKG, Ryder D, Taylor NGH, Thrush MA, Wallace IS & Sharkey KJ (2019) The Contact Structure of Great Britain's Salmon and Trout Aquaculture Industry. Epidemics, 28, Art. No.: 100342. https://doi.org/10.1016/j.epidem.2019.05.001
Article
The importance of fisheries and aquaculture production for nutrition and food security
Norman R, Crumlish M & Stetkiewicz S (2019) The importance of fisheries and aquaculture production for nutrition and food security. Revue Scientifique et Technique - Office International des Epizooties, 38 (2), pp. 395-407. https://doi.org/10.20506/rst.38.2.2994
Article
Ameerbakhsh O, Maharaj S, Hussain A & McAdam B (2019) A comparison of two methods of using a serious game for teaching marine ecology in a university setting. International Journal of Human-Computer Studies, 127, pp. 181-189. https://doi.org/10.1016/j.ijhcs.2018.07.004
Article
Hamami D, Atmani B, Cameron R, Pollock KG & Shankland C (2019) Improving process algebra model structure and parameters in infectious disease epidemiology through data mining. Journal of Intelligent Information Systems, 52 (3), pp. 477-499. https://doi.org/10.1007/s10844-017-0476-1
Article
Kleczkowski A, Hoyle A & McMenemy P (2019) One model to rule them all? Modelling approaches across OneHealth for human, animal and plant epidemics. Philosophical Transactions B: Biological Sciences, 374 (1775), Art. No.: 20180255. https://doi.org/10.1098/rstb.2018.0255
Conference Paper (published)
From exponential analysis to Padé approximation and tensor decomposition, in one and more dimensions
Cuyt A, Knaepkens F & Lee W (2018) From exponential analysis to Padé approximation and tensor decomposition, in one and more dimensions. In: Gerdt V, Koepf W, Seiler W & Vorozhtsov E (eds.) Computer Algebra in Scientific Computing. CASC 2018. Lecture Notes in Computer Science (LNCS), 11077. Computer Algebra in Scientific Computing, Lille, France, 17.09.2018-21.09.2018. Cham, Switzerland: Springer International Publishing, pp. 116-130. https://doi.org/10.1007/978-3-319-99639-4_8
Article
Multivariate exponential analysis from the minimal number of samples
Cuyt A & Lee W (2018) Multivariate exponential analysis from the minimal number of samples. Advances in Computational Mathematics, 44 (4), pp. 987-1002. https://doi.org/10.1007/s10444-017-9570-8
Article
Faint and clustered components in exponential analysis
Cuyt A, Tsai M, Verhoye M & Lee W (2018) Faint and clustered components in exponential analysis. Applied Mathematics and Computation, 327, pp. 93-103. https://doi.org/10.1016/j.amc.2017.11.007
Article
Deterministic sparse FFT for M-sparse vectors
Plonka G, Wannenwetsch K, Cuyt A & Lee W (2018) Deterministic sparse FFT for M-sparse vectors. Numerical Algorithms, 78 (1), pp. 133-159. https://doi.org/10.1007/s11075-017-0370-5
Conference Paper (published)
Superresolution underwater acoustics
Cuyt A, Lee W, Tijskens E, Hong W, Wang J, Cools T & Geerts T (2018) Superresolution underwater acoustics. In: Proceedings of Euronoise 2018. Euronoise 2018, 27.05.2018-31.05.2018. Crete, Greece: Hellenic Institute of Acoustics, pp. 2845-2850. http://www.euronoise2018.eu/docs/papers/469_Euronoise2018.pdf
Article
Mothersill C, Abend M, Bréchignac F, Copplestone D, Geras’kin S, Goodman J, Horemans N, Jeggo P, McBride W, Mousseau TA, O’Hare A, Papineni RVL, Powathil G, Schofield PN & Austin B (2018) The tubercular badger and the uncertain curve:- the need for a multiple stressor approach in environmental radiation protection. Environmental Research, 168, pp. 130-140. https://doi.org/10.1016/j.envres.2018.09.031
Conference Paper (published)
Process Algebra with Layers: Multi-scale Integration Modelling applied to Cancer Therapy
Scott E, Nicol J, Coulter J, Hoyle A & Shankland C (2017) Process Algebra with Layers: Multi-scale Integration Modelling applied to Cancer Therapy. In: Bracciali A, Caravagna G, Gilbert D & Tagliaferri R (eds.) Computational Intelligence Methods for Bioinformatics and Biostatistics. CIBB 2016. Lecture Notes in Computer Science, 10477. CIBB2016: 13th International Conference on Computational Intelligence methods for Bioinformatics and Biostatistics, Stirling, UK, 01.09.2016-03.09.2016. Cham, Switzerland: Springer, pp. 118-133. https://doi.org/10.1007/978-3-319-67834-4_10
Conference Paper (published)
Validated exponential analysis for harmonic sounds
Briani M, Cuyt A & Lee W (2017) Validated exponential analysis for harmonic sounds. In: Torin A, Hamilton B, Bilbao S & Newton M (eds.) Proceedings of the 20th International Conference on Digital Audio Effects (DAFx-17). DAFx proceedings series. 20th International Conference on Digital Audio Effects, Edinburgh, UK, 05.09.2017-09.09.2017. Hamburg, Germany: University of Edinburgh, pp. 222-227. http://www.dafx17.eca.ed.ac.uk/Proceedings.html
Conference Paper (published)
Sparse interpolation, the FFT algorithm and FIR filters
Briani M, Cuyt A & Lee W (2017) Sparse interpolation, the FFT algorithm and FIR filters. In: Gerdt V, Koepf W, Seiler W & Vorozhtsov E (eds.) Computer Algebra in Scientific Computing - 19th International Workshop, CASC 2017, Beijing, China, September 18-22, 2017, Proceedings. Lecture Notes in Computer Science (LNCS), 10490. 19th International Workshop on Computer Algebra in Scientific Computing, Beijing, China, 18.09.2017-22.09.2017. Cham, Switzerland: Springer International Publishing, pp. 27-39. https://doi.org/10.1007/978-3-319-66320-3
Article
Formulation, stabilisation and encapsulation of bacteriophage for phage therapy
Malik DJ, Sokolov IJ, Vinner GK, Mancuso F, Cinquerrui S, Vladisavljevic GT, Clokie MRJ, Garton NJ, Stapley AGF & Kirpichnikova A (2017) Formulation, stabilisation and encapsulation of bacteriophage for phage therapy. Advances in Colloid and Interface Science, 249, pp. 100-133. https://doi.org/10.1016/j.cis.2017.05.014
Article
Hamami D, Baghdad A & Shankland C (2017) Decision Support Based on Bio-PEPA Modeling and Decision Tree Induction: A New Approach, Applied to a Tuberculosis Case Study. International Journal of Information Systems in the Service Sector, 9 (2), pp. 71-101. https://doi.org/10.4018/IJISSS.2017040104
Article
Breaking beta: deconstructing the parasite transmission function
McCallum H, Fenton A, Hudson PJ, Lee B, Levick B, Norman R, Perkins S, Viney M, Wilson A & Lello J (2017) Breaking beta: deconstructing the parasite transmission function. Philosophical Transactions B: Biological Sciences, 372 (1719), Art. No.: 20160084. https://doi.org/10.1098/rstb.2016.0084
Article
Wilson A, Morgan E, Booth M, Norman R, Perkins S, Hauffe H, Mideo N, Antonovics J, McCallum H & Fenton A (2017) What is a vector?. Philosophical Transactions B: Biological Sciences, 372 (1719), Art. No.: 20160085. https://doi.org/10.1098/rstb.2016.0085
Article
Hamami D, Cameron R, Pollock KG & Shankland C (2017) Waning immunity is associated with periodic large outbreaks of mumps: a mathematical modeling study of Scottish data. Frontiers in Physiology, 8, Art. No.: 233. https://doi.org/10.3389/fphys.2017.00233
Article
Reconstructing disease transmission dynamics from animal movements and test data
Enright JA & O'Hare A (2017) Reconstructing disease transmission dynamics from animal movements and test data. Stochastic Environmental Research and Risk Assessment, 31 (2), pp. 369-377. https://doi.org/10.1007/s00477-016-1354-z
Research Report
Environmental tipping points and food system dynamics: Main report
Benton T, Fairweather D, Graves A, Harris J, Jones A, Lenton T, Norman R, O'Riordan T, Pope E & Tiffin R (2017) Environmental tipping points and food system dynamics: Main report. Global Food Security. http://www.foodsecurity.ac.uk/assets/pdfs/environmental-tipping-points-report.pdf
Newspaper Article
Food security looks very different depending on where you are sitting
Norman R (2017) Food security looks very different depending on where you are sitting. The Conversation. 22.01.2017. https://theconversation.com/food-security-looks-very-different-depending-on-where-you-are-sitting-68396
Article
Denholm SJ, Hoyle A, Shinn A, Paladini G, Taylor NGH & Norman R (2016) Predicting the potential for natural recovery of Atlantic salmon (Salmo salar L.) populations following the introduction of Gyrodactylus salaris Malmberg, 1957 (Monogenea). PLoS ONE, 11 (12), Art. No.: e0169168. https://doi.org/10.1371/journal.pone.0169168
Conference Paper (published)
An exploratory case study of interactive simulation for teaching Ecology
Ameerbakhsh O, Maharaj S, Hussain A, Paine CET & Taiksi S (2016) An exploratory case study of interactive simulation for teaching Ecology. In: 2016 15th International Conference on Information Technology Based Higher Education and Training (ITHET). ITHET 2016: 15th International Conference on Information Technology Based Higher Education and Training, Istanbul, Turkey, 08.09.2016-10.09.2016. Piscataway, NJ, USA: IEEE. https://doi.org/10.1109/ITHET.2016.7760725
Conference Paper (published)
A short-time Prony method for the detection of transients
Cuyt A, Lee W & Tsai M (2016) A short-time Prony method for the detection of transients. In: Papadrakakis M, Papadopoulos V, Stefanou G & Plevris V (eds.) ECCOMAS Congress 2016 - VII European Congress on Computational Methods in Applied Sciences and Engineering Proceedings. VII European Congress on Computational Methods in Applied Sciences and Engineering (ECCOMAS Congress 2016), Crete Island, Greece, 05.06.2016-10.06.2016. Athens, Greece: Institute of Structural Analysis and Antiseismic Research, National Technical University of Athens, pp. 4313-4321. https://www.eccomas2016.org/proceedings/pdf/7676.pdf
Conference Paper (published)
Sparse interpolation and rational approximation
Cuyt A & Lee W (2016) Sparse interpolation and rational approximation. In: Hardin D, Lubinsky D & Simanek B (eds.) Modern Trends in Constructive Function Theory. Contemporary Mathematics, 661. Constructive Functions 2014 - Conference in Honor of Ed Saff's 70th Birthday, Nashville, TN, USA, 26.05.2014-30.05.2014. Providence, RI, USA, pp. 229-242. https://bookstore.ams.org/conm-661
Other
Sparse Modelling and Multi-exponential Analysis
Cuyt A, Labahn G, Sidi A & Lee W (2016) Sparse Modelling and Multi-exponential Analysis. Dagstuhl Seminar 15251, Wadern, Germany Dagstuhl Reports, 6 (6), pp. 48-69. https://doi.org/10.4230/DagRep.5.6.48
Newspaper Article
Food security and why Christmas dinner is in peril
Norman R (2016) Food security and why Christmas dinner is in peril. The Conversation. 21.12.2016. https://theconversation.com/food-security-and-why-christmas-dinner-is-in-peril-70689
Article
Optimising Antibiotic Usage to Treat Bacterial Infections
Paterson IK, Hoyle A, Ochoa G, Baker-Austin C & Taylor NGH (2016) Optimising Antibiotic Usage to Treat Bacterial Infections. Scientific Reports, 6, Art. No.: 37853. https://doi.org/10.1038/srep37853
Article
Towards unsupervised fluorescence lifetime imaging using low dimensional variable projection
Zhang Y, Cuyt A, Lee W, Lo Bianco G, Wu G, Chen Y & Li DD (2016) Towards unsupervised fluorescence lifetime imaging using low dimensional variable projection. Optics Express, 24 (23), pp. 26777-26791. https://doi.org/10.1364/oe.24.026777
Conference Paper (published)
Scott E, Hoyle A & Shankland C (2016) Process Algebra with Layers: A Language for Multi-scale Integration Modelling, Illustrated by a Cell Cycle and DNA Damage Case Study. In: Bracciali A & Caravagna G (eds.) Proceedings of Computational Intelligence Methods for Bioinformatics and Biostatistics. 13th International Conference on Computational Intelligence methods for Bioinformatics and Biostatistics, Stirling, 01.09.2016-03.09.2016. Stirling: University of Stirling, pp. 240-246. http://www.cs.stir.ac.uk/events/cibb2016/index.html
Article
Past and future perspectives on mathematical models of tick-borne pathogens
Norman RA, Worton AJ & Gilbert L (2016) Past and future perspectives on mathematical models of tick-borne pathogens. Parasitology, 143 (7), pp. 850-859. https://doi.org/10.1017/S0031182015001523
Presentation / Talk
Gamification for public engagement with invasive tree pests and diseases
Maharaj S, Jones G, Greene P & Docherty C (2016) Gamification for public engagement with invasive tree pests and diseases. First International European Citizen Science Association (ESCA) Conference 2016: Citizen Science - Innovation in Open Science, Society and Policy, Berlin, 19.05.2016-21.05.2016.
Article
Cook D, Aurambout J, Villalta O, Liu S, Edwards J & Maharaj S (2016) A bio-economic 'war game' model to simulate plant disease incursions and test response strategies at the landscape scale. Food Security, 8 (1), pp. 37-48. https://doi.org/10.1007/s12571-015-0524-z
Article
Broadwick: a framework for computational epidemiology
O'Hare A, Lycett SJ, Doherty T, Salvador LCM & Kao RR (2016) Broadwick: a framework for computational epidemiology. BMC Bioinformatics, 17 (1), Art. No.: 65. https://doi.org/10.1186/s12859-016-0903-2
Conference Paper (unpublished)
Gamification for public engagement with invasive tree pests and diseases
Maharaj S (2015) Gamification for public engagement with invasive tree pests and diseases. European Citizen Science Association conference, Berlin.
Article
Williams L, Rasmussen S, Kleczkowski A, Maharaj S & Cairns N (2015) Protection motivation theory and social distancing behaviour in response to a simulated infectious disease epidemic. Psychology, Health and Medicine, 20 (7), pp. 832-837. https://doi.org/10.1080/13548506.2015.1028946
Article
Numerical reconstruction of convex polytopes from directional moments
Collowald M, Cuyt A, Hubert E, Lee W & Salazar Celis O (2015) Numerical reconstruction of convex polytopes from directional moments. Advances in Computational Mathematics, 41 (6), pp. 1079-1099. https://doi.org/10.1007/s10444-014-9401-0
Article
Inference in High Dimensional Parameter Space
O'Hare A (2015) Inference in High Dimensional Parameter Space. Journal of Computational Biology, 22 (11), pp. 997-1004. https://doi.org/10.1089/cmb.2015.0086
Article
Spontaneous social distancing in response to a simulated epidemic: a virtual experiment
Kleczkowski A, Maharaj S, Rasmussen S, Williams L & Cairns N (2015) Spontaneous social distancing in response to a simulated epidemic: a virtual experiment. BMC Public Health, 15, Art. No.: 973. https://doi.org/10.1186/s12889-015-2336-7
Research Report
Gamification within plant health in the Forestry Commission
Maharaj S & Greene P (2015) Gamification within plant health in the Forestry Commission. Forestry Commission Scotland. University of Stirling. http://www.forestry.gov.uk/pdf/Gamification_in_the_FC.pdf/$FILE/Gamification_in_the_FC.pdf
Conference Paper (published)
Banerjee S & Maharaj S (2015) Strategic Interactions and Information Exchange on Networks: An Agent Based Simulation Model of Landowner Behavior in Conservation Incentive Schemes. In: Miguel F, Amblard F, Barcelo J & Madella M (eds.) Advances in Computational Social Science and Social Simulation: Proceedings of the Social Simulation Conference 2014 Barcelona, Catalunya (Spain), September 15. Social Simulation Conference, Universitat Autonoma Barcelona, 01.09.2014-05.09.2014. Barcelona: Universitat Autònoma de Barcelona Press, pp. 42-46. http://ddd.uab.cat/pub/poncom/2014/125597/advcomsocsci_a2014.pdf
Conference Paper (published)
Using process algebra to model radiation induced bystander effects
Lintott R, McMahon S, Prise K, Addie-Lagorio C & Shankland C (2014) Using process algebra to model radiation induced bystander effects. In: Mendes P, Dada J & Smallbone K (eds.) Computational Methods in Systems Biology: 12th International Conference, CMSB 2014, Manchester, UK, November 17-19, 2014, Proceedings. Lecture Notes in Computer Science, 8859. Computational Methods in Systems Biology 2014, Manchester, UK, 17.11.2014-19.11.2014. Cham, Switzerland: Springer International Publishing, pp. 196-210. https://doi.org/10.1007/978-3-319-12982-2_14
Edited Book
Feng R, Lee W & Sato Y (eds.) (2014) Computer Mathematics -- 9th Asian Symposium (ASCM2009), Fukuoka, December 2009, 10th Asian Symposium (ASCM2012), Beijing, October 2012, Contributed Papers and Invited Talks. Berlin Heidelberg: Springer-Verlag. https://www.springer.com/gb/book/9783662437988; https://doi.org/10.1007/978-3-662-43799-5
Patent
Smart data sampling and data reconstruction
Cuyt A & Lee W (2014) Smart data sampling and data reconstruction. Issuing Office no. EP2745404B1.
Article
O'Hare A, Orton R, Bessell PR & Kao RR (2014) Estimating epidemiological parameters for bovine tuberculosis in British cattle using a Bayesian partial-likelihood approach. Proceedings of the Royal Society B: Biological Sciences, 281 (1783), Art. No.: 20140248. https://doi.org/10.1098/rspb.2014.0248
Conference Paper (published)
Sparse reconstruction of correlated multichannel activity
Peelman S, Van der Herten J, De Vos M, Lee W, Van Huffel S & Cuyt A (2013) Sparse reconstruction of correlated multichannel activity. In: 2013 35th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC). 35th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC 2013), Osaka, Japan, 03.07.2013-07.07.2013. Piscataway, NJ, USA: IEEE, pp. 3897-3900. https://doi.org/10.1109/EMBC.2013.6610396
Article
Reproductive Trade-Offs May Moderate the Impact of Gyrodactylus salaris in Warmer Climates
Denholm SJ, Norman R, Hoyle A, Shinn A & Taylor NGH (2013) Reproductive Trade-Offs May Moderate the Impact of Gyrodactylus salaris in Warmer Climates. PLoS ONE, 8 (10), Art. No.: e78909. https://doi.org/10.1371/journal.pone.0078909
Article
Porter R, Norman R & Gilbert L (2013) A model to test how ticks and louping ill virus can be controlled by treating red grouse with acaricide. Medical and Veterinary Entomology, 27 (3), pp. 237-246. https://doi.org/10.1111/j.1365-2915.2012.01047.x
Article
A mathematical model on CTL mediated control of hiv infection in a long-term drug therapy
Roy PK, Chowdhury S, Chatterjee AN, Chattopadhyay J & Norman R (2013) A mathematical model on CTL mediated control of hiv infection in a long-term drug therapy. Journal of Biological Systems, 21 (3), Art. No.: 1350019. https://doi.org/10.1142/S0218339013500198
Conference Paper (published)
Scott E, Hoyle A & Shankland C (2013) PEPA'd Oysters: Converting Dynamic Energy Budget Models to Bio-PEPA, illustrated by a Pacific oyster case study. In: Bradley J, Heljanko K, Knottenbelt W & Thomas N (eds.) volume 296. PASM'12: Sixth International Workshop on Practical Applications of Stochastic Modelling, Imperial College London, UK, 17.09.2012-17.09.2012. Elsevier, pp. 211-228. https://doi.org/10.1016/j.entcs.2013.07.014
Conference Paper (published)
Reflections on a virtual experiment addressing human behavior during epidemics
Delaney L, Kleczkowski A, Maharaj S, Rasmussen S & Williams L (2013) Reflections on a virtual experiment addressing human behavior during epidemics. In: SummerSim '13 2013 Summer Simulation Multiconference Toronto, Canada — July 07 - 10, 2013. Simulation series, 45.11. Summer Computer Simulation Conference 2013, Toronto, Canada, 07.07.2013-10.07.2013. Vista, CA: Society for Modeling & Simulation International. http://dl.acm.org/citation.cfm?id=2557732&CFID=279840820&CFTOKEN=77799498
Article
Using process algebra to develop predator-prey models of within-host parasite dynamics
McCaig C, Fenton A, Graham A, Shankland C & Norman R (2013) Using process algebra to develop predator-prey models of within-host parasite dynamics. Journal of Theoretical Biology, 329, pp. 74-81. https://doi.org/10.1016/j.jtbi.2013.03.001
Article
The impact of increased dispersal in response to disease control in patchy environments
Lintott R, Norman R & Hoyle A (2013) The impact of increased dispersal in response to disease control in patchy environments. Journal of Theoretical Biology, 323, pp. 57-68. https://doi.org/10.1016/j.jtbi.2013.01.027
Article
Porter R, Norman R & Gilbert L (2013) An alternative to killing? Treatment of reservoir hosts to control a vector and pathogen in a susceptible species. Parasitology, 140 (2), pp. 247-257. https://doi.org/10.1017/S0031182012001400
Article
Bessell PR, Orton R, O'Hare A, Mellor DJ, Logue D & Kao RR (2013) Developing a framework for risk-based surveillance of tuberculosis in cattle: a case study of its application in Scotland. Epidemiology and Infection, 141 (2), pp. 314-323. https://doi.org/10.1017/S0950268812000635
Patent
Smart data sampling and data reconstruction
Cuyt A & Lee W (2013) Smart data sampling and data reconstruction. Issuing Office no. US 9,690,749 B2.
Conference Paper (published)
Measles epidemics and PEPA: An exploration of historic disease dynamics using process algebra
Benkirane S, Norman R, Scott E & Shankland C (2012) Measles epidemics and PEPA: An exploration of historic disease dynamics using process algebra. In: Giannakopoulou D & Mery D (eds.) FM 2012: Formal Methods: 18th International Symposium, Paris, France, August 27-31, 2012. Proceedings. Lecture Notes in Computer Science, 7436. FM 2012: Formal Methods 18th International Symposium, Paris, France, 27.08.2012-31.08.2012. Berlin Heidelberg: Springer-Verlag, pp. 101-115. http://link.springer.com/chapter/10.1007%2F978-3-642-32759-9_11; https://doi.org/10.1007/978-3-642-32759-9_11
Conference Paper (published)
Evolving Bio-PEPA process algebra models using genetic programming
Marco D, Shankland C & Cairns D (2012) Evolving Bio-PEPA process algebra models using genetic programming. In: Proc. of the 14th International Conference on Genetic and Evolutionary Computation (GECCO). GECCO, 14. Fourteenth International Conference on Genetic and Evolutionary Computation conference (GECCO) 2012, Philadelphia, USA, 07.07.2012-11.07.2012. New York, NY, USA: ACM, pp. 177-184. http://doi.acm.org/10.1145/2330163.2330189; https://doi.org/10.1145/2330163.2330189
Conference Paper (published)
Marco D, Scott E, Cairns D, Graham A, Allen JE, Mahajan SM & Shankland C (2012) Investigating co-infection dynamics through evolution of Bio-PEPA model parameters: a combined process algebra and evolutionary computing approach. In: Gilbert D & Heiner M (eds.) Computational Methods in Systems Biology: 10th International Conference, CMSB 2012, London, UK, October 3-5, 2012. Proceedings. Lecture Notes in Computer Science, 7605. The 10th Conference on Computational Methods in Systems Biology, CMSB 2012, London, UK, 03.10.2012-05.10.2012. Berlin Heidelberg: Springer-Verlag, pp. 227-246. http://sites.brunel.ac.uk/cmsb2012; https://doi.org/10.1007/978-3-642-33636-2_14
Article
McPherson N, Norman R, Hoyle A, Bron J & Taylor NGH (2012) Stocking methods and parasite-induced reductions in capture: Modelling Argulus foliaceus in trout fisheries. Journal of Theoretical Biology, 312, pp. 22-33. https://doi.org/10.1016/j.jtbi.2012.07.017
Article
Biek R, O'Hare A, Wright D, Mallon T, McCormick C, Orton R, McDowell S, Trewby H, Skuce RA & Kao RR (2012) Whole Genome Sequencing Reveals Local Transmission Patterns of Mycobacterium bovis in Sympatric Cattle and Badger Populations. PLoS Pathogens, 8 (11), Art. No.: e1003008. https://doi.org/10.1371/journal.ppat.1003008
Article
Controlling epidemic spread by social distancing: Do it well or not at all
Maharaj S & Kleczkowski A (2012) Controlling epidemic spread by social distancing: Do it well or not at all. BMC Public Health, 12 (679). https://doi.org/10.1186/1471-2458-12-679
Article
Risk of Foot-and-Mouth Disease Spread Due to Sole Occupancy Authorities and Linked Cattle Holdings
Orton R, Bessell PR, Birch CPD, O'Hare A & Kao RR (2012) Risk of Foot-and-Mouth Disease Spread Due to Sole Occupancy Authorities and Linked Cattle Holdings. PLoS ONE, 7 (4), Art. No.: e35089. https://doi.org/10.1371/journal.pone.0035089
Article
Controlling tick-borne diseases through domestic animal management: a theoretical approach
Porter R, Norman R & Gilbert L (2011) Controlling tick-borne diseases through domestic animal management: a theoretical approach. Theoretical Ecology, 4 (3), pp. 321-339. https://doi.org/10.1007/s12080-010-0080-2
Conference Paper (published)
Optimisation of Process Algebra Models Using Evolutionary Computation
Marco D, Cairns D & Shankland C (2011) Optimisation of Process Algebra Models Using Evolutionary Computation. In: IEEE Congress on Evolutionary Computation (CEC), 2011. IEEE Congress on Evolutionary Computation (CEC) IEEE Congress on Evolutionary Computation, Singapore, 05.06.2011-08.06.2011. Piscataway, NJ: Institute of Electrical and Electronics Engineers (IEEE), pp. 1296-1301. https://doi.org/10.1109/CEC.2011.5949765
Conference Paper (published)
A Participatory Simulation Model for Studying Attitudes to Infection Risk
Maharaj S, Kleczkowski A & McCaldin T (2011) A Participatory Simulation Model for Studying Attitudes to Infection Risk. In: Proceedings of the Summer Computer Simulation Conference 2011 (SCSC 2011). Summer Computer Simulation Conference 2011 (SCSC 2011), The Hague, NL, 27.06.2011-30.06.2011. California: Society for Modeling and Simulation International Vista / ACM Digital Library, pp. 8-13.
Article
Taylor NGH, Norman R, Way K & Peeler EJ (2011) Modelling the koi herpesvirus (KHV) epidemic highlights the importance of active surveillance within a national control policy. Journal of Applied Ecology, 48 (2), pp. 348-355. http://onlinelibrary.wiley.com/doi/10.1111/j.1365-2664.2010.01926.x/abstract?systemMessage=Wiley+Online+Library+will+be+disrupted+on+9+June+from+10%3A00-12%3A00+BST+%2805%3A00-07%3A00+EDT%29+for+essential+maintenance; https://doi.org/10.1111/j.1365-2664.2010.01926.x
Article
A Symbolic Investigation of Superspreaders
McCaig C, Begon M, Norman R & Shankland C (2011) A Symbolic Investigation of Superspreaders. Bulletin of Mathematical Biology, 73 (4), pp. 777-794. https://doi.org/10.1007/s11538-010-9603-7
Article
From Individuals to Populations: a mean field semantics for process algebra
McCaig C, Norman R & Shankland C (2011) From Individuals to Populations: a mean field semantics for process algebra. Theoretical Computer Science, 412 (17), pp. 1557-1580. http://www.sciencedirect.com/science/journal/03043975; https://doi.org/10.1016/j.tcs.2010.09.024
Article
McCaig C, Begon M, Norman R & Shankland C (2011) A rigorous approach to investigating common assumptions about disease transmission: Process algebra as an emerging modelling methodology for epidemiology. Theory in Biosciences, 130 (1), pp. 19-29. http://www.springerlink.com/content/1431-7613/; https://doi.org/10.1007/s12064-010-0106-8
Conference Paper (published)
Stay at Home, Wash Your Hands: Epidemic Dynamics with Awareness of Infection
Kleczkowski A & Maharaj S (2010) Stay at Home, Wash Your Hands: Epidemic Dynamics with Awareness of Infection. In: SummerSim '10 2010 Summer Simulation Multiconference. Summer Simulation Multiconference, Ottawa, Canada, 01.07.2010. San Diego: Society for Computer Simulation International, pp. 141-146. http://dl.acm.org/citation.cfm?id=1999432
Conference Paper (unpublished)
Modelling Immunological Systems using PEPA: a preliminary report
Scott E, Mahajan SM, Brand-Spencer T, Allen JE, Norman R, Graham AL & Shankland C (2010) Modelling Immunological Systems using PEPA: a preliminary report. 9th Workshop on Process Algebra and Stochastically Timed Activities (PASTA 2010), London, UK, 06.09.2010-07.09.2010. http://aesop.doc.ic.ac.uk/conferences/pasta/2010
Conference Paper (published)
Modelling the bubonic plague in a prairie dog burrow: a work in progress
Benkirane S, Shankland C, Norman R & McCaig C (2009) Modelling the bubonic plague in a prairie dog burrow: a work in progress. In: Clark A & Guerriero M (eds.) 8th Workshop on Process Algebra and Stochastically Timed Activities: PASTA 2009. PASTA 2009 - 8th Workshop on Process Algebra and Stochastically Timed Activities, Edinburgh, UK, 26.08.2009-27.08.2009. Edinburgh, UK: University of Edinburgh, pp. 145-152. http://www.cs.stir.ac.uk/~sbk/PASTA2009.pdf
Conference Paper (published)
Studying the effects of adding spatiality to a process algebra model
Maharaj S, McCaig C & Shankland C (2009) Studying the effects of adding spatiality to a process algebra model. In: Clark A & Guerriero M (eds.) 8th Workshop on Process Algebra and Stochastically Timed Activities: PASTA 2009. 8th Workshop on Process Algebra and Stochastically Timed Activities (PASTA 2009): Edinburgh, UK, Edinburgh, 26.08.2009-26.08.2009. Edinburgh, UK: University of Edinburgh, pp. 153-158. http://www.dcs.ed.ac.uk/pepa/group/pastaworkshop/PASTA09/proceedings.pdf
Conference Paper (published)
Improved Continuous Approximation of PEPA Models through Epidemiological Examples
Benkirane S, Hillston J, McCaig C, Norman R & Shankland C (2009) Improved Continuous Approximation of PEPA Models through Epidemiological Examples. In: volume 229. From Biology To Concurrency and back (FBTC 2008), A Satellite Workshop of ICALP 2008, 12.07.2008-12.07.2008. Elsevier, pp. 59-74. https://doi.org/10.1016/j.entcs.2009.02.005
Article
Symbolic-numeric sparse interpolation of multivariate polynomials
Giesbrecht M, Labahn G & Lee W (2009) Symbolic-numeric sparse interpolation of multivariate polynomials. Journal of Symbolic Computation, 44 (8), pp. 943-959. https://doi.org/10.1016/j.jsc.2008.11.003
Article
From Individuals to Populations: A Symbolic Process Algebra Approach to Epidemiology
McCaig C, Norman R & Shankland C (2009) From Individuals to Populations: A Symbolic Process Algebra Approach to Epidemiology. Mathematics in Computer Science, 2 (3), pp. 535-556. http://www.springerlink.com/content/1661-8270/; https://doi.org/10.1007/s11786-008-0066-2
Conference Paper (published)
Process Algebra Models of Population Dynamics
McCaig C, Norman R & Shankland C (2008) Process Algebra Models of Population Dynamics. In: Horimoto K, Regensburger G, Rosenkranz M & Yoshida H (eds.) Algebraic Biology. Lecture Notes in Computer Science, 5147. Algebraic Biology 2008, Castle of Hagenberg, Austria, 31.07.2008-02.08.2008. Berlin Heidelberg: Springer, pp. 139-155. http://www.springerlink.com/content/y26143833jl82307/?MUD=MP; https://doi.org/10.1007/978-3-540-85101-1
Technical Report
Deriving Mean Field Equations from Large Process Algebra Models
McCaig C, Norman R & Shankland C (2008) Deriving Mean Field Equations from Large Process Algebra Models. Technical Report CSM, 175. Department of Computing Science and Mathematics, University of Stirling.