Article 
    Vegetable omega-3 and omega-6 fatty acids differentially modulate the antiviral and antibacterial immune responses of Atlantic salmon
	Caballero-Solares A, Eslamloo K, Hall JR, Katan T, Emam M, Xue X, Taylor RG, Balder R, Parrish CC & Rise ML (2024) Vegetable omega-3 and omega-6 fatty acids differentially modulate the antiviral and antibacterial immune responses of Atlantic salmon. Scientific Reports, 14, Art. No.: 10947. https://doi.org/10.1038/s41598-024-61144-w
	
			
     Article 
    Characterization of the impact of dietary immunostimulant CpG on the expression of mRNA biomarkers involved in the immune responses in Atlantic salmon (Salmo salar)
	Xue X, Eslamloo K, Caballero-Solares A, Katan T, Umasuthan N, Taylor RG, Fast MD, Andreassen R & Rise ML (2024) Characterization of the impact of dietary immunostimulant CpG on the expression of mRNA biomarkers involved in the immune responses in Atlantic salmon (Salmo salar). Fish & Shellfish Immunology, 153, Art. No.: 109840. https://doi.org/10.1016/j.fsi.2024.109840
	
			
     Article 
    Synergies of co-infecting pathogens, sea lice (Lepeophetheirus salmonis) and Moritella viscosa, are impacted by exposure order, and host response to initial infection
	Cai W, Zhong L, Parrish K, Kumar S, Eslamloo K, Fajei E, Whyte SK, Purcell SL, Jahangiri L, Li R, Solares AC, Taylor RG, Balder R, Rise ML & Fast MD (2024) Synergies of co-infecting pathogens, sea lice (Lepeophetheirus salmonis) and Moritella viscosa, are impacted by exposure order, and host response to initial infection. Aquaculture, 591, Art. No.: 741115. https://doi.org/10.1016/j.aquaculture.2024.741115
	
			
     Article 
    An aquaculture risk model to understand the causes and consequences of Atlantic Salmon mass mortality events: A review
	Sajid Z, Gamperl AK, Parrish CC, Colombo SM, Santander J, Mather C, Neis B, Holmen IM, Filgueira R, McKenzie CH, Cavalli LS, Jeebhay M, Gao W, López Gómez MA & Caballero‐Solares A (2024) An aquaculture risk model to understand the causes and consequences of Atlantic Salmon mass mortality events: A review. Reviews in Aquaculture, 16 (4), pp. 1674-1695. https://doi.org/10.1111/raq.12917
	
			
     Article 
    Transcriptomic response of lumpfish (Cyclopterus lumpus) head kidney to viral mimic, with a focus on the interferon regulatory factor family
	Emam M, Kumar S, Eslamloo K, Caballero-Solares A, Hall JR, Xue X, Paradis H, Gendron RL, Santander J & Rise ML (2024) Transcriptomic response of lumpfish (Cyclopterus lumpus) head kidney to viral mimic, with a focus on the interferon regulatory factor family. Frontiers in Immunology, 15. https://doi.org/10.3389/fimmu.2024.1439465
	
			
     Article 
    Prolonged Cold Exposure Negatively Impacts Atlantic Salmon (Salmo salar) Liver Metabolism and Function
	Rojas I, Caballero-Solares A, Vadboncoeur É, Sandrelli RM, Hall JR, Clow KA, Parrish CC, Rise ML, Swanson AK & Gamperl AK (2024) Prolonged Cold Exposure Negatively Impacts Atlantic Salmon (Salmo salar) Liver Metabolism and Function. Biology, 13 (7), Art. No.: 494. https://doi.org/10.3390/biology13070494
	
			
     Article 
    Interacting Effects of Sea Louse (Lepeophtheirus salmonis) Infection and Formalin-Killed Aeromonas salmonicida on Atlantic Salmon Skin Transcriptome
	Caballero-Solares A, Umasuthan N, Xue X, Katan T, Kumar S, Westcott JD, Chen Z, Fast MD, Skugor S, Taylor RG & Rise ML (2024) Interacting Effects of Sea Louse (Lepeophtheirus salmonis) Infection and Formalin-Killed Aeromonas salmonicida on Atlantic Salmon Skin Transcriptome. Frontiers in Immunology, 13. https://doi.org/10.3389/fimmu.2022.804987
	
			
     Article 
    Gill and Liver Transcript Expression Changes Associated With Gill Damage in Atlantic Salmon (Salmo salar)
	Emam M, Caballero-Solares A, Xue X, Umasuthan N, Milligan B, Taylor RG, Balder R & Rise ML (2022) Gill and Liver Transcript Expression Changes Associated With Gill Damage in Atlantic Salmon (Salmo salar). Frontiers in Immunology, 13, Art. No.: 806484. https://doi.org/10.3389/fimmu.2022.806484
	
			
     Book Chapter 
    Reverse Transcription-Quantitative Real-Time Polymerase Chain Reaction (RT-qPCR) for Gene Expression Analyses
	Caballero-Solares A, Hall JR, Xue X & Rise ML (2022) Reverse Transcription-Quantitative Real-Time Polymerase Chain Reaction (RT-qPCR) for Gene Expression Analyses. In: Christian SL (ed.) Cancer Cell Biology. Methods in Molecular Biology, 2508. Springer US, pp. 319-340. https://doi.org/10.1007/978-1-0716-2376-3_21
	
			
     Article 
    Nutritional immunomodulation of Atlantic salmon response to Renibacterium salmoninarum bacterin
	Emam M, Eslamloo K, Caballero-Solares A, Lorenz EK, Xue X, Umasuthan N, Gnanagobal H, Santander J, Taylor RG, Balder R, Parrish CC & Rise ML (2022) Nutritional immunomodulation of Atlantic salmon response to Renibacterium salmoninarum bacterin. Frontiers in Molecular Biosciences, 9. https://doi.org/10.3389/fmolb.2022.931548
	
			
     Article 
    Distinct early life stage gene expression effects of hybridization among European and North American farmed and wild Atlantic salmon populations
	Islam SS, Xue X, Caballero‐Solares A, Bradbury IR, Rise ML & Fleming IA (2022) Distinct early life stage gene expression effects of hybridization among European and North American farmed and wild Atlantic salmon populations. Molecular Ecology, 31 (9), pp. 2712-2729. https://doi.org/10.1111/mec.16418
	
			
     Article 
    Transcriptome Analysis of Atlantic Salmon (Salmo salar) Skin in Response to Sea Lice and Infectious Salmon Anemia Virus Co-Infection Under Different Experimental Functional Diets
	Cai W, Kumar S, Navaneethaiyer U, Caballero-Solares A, Carvalho LA, Whyte SK, Purcell SL, Gagne N, Hori TS, Allen M, Taylor RG, Balder R, Parrish CC, Rise ML & Fast MD (2022) Transcriptome Analysis of Atlantic Salmon (Salmo salar) Skin in Response to Sea Lice and Infectious Salmon Anemia Virus Co-Infection Under Different Experimental Functional Diets. Frontiers in Immunology, 12. https://doi.org/10.3389/fimmu.2021.787033
	
			
     Article 
    Influence of Varying Dietary ω6 to ω3 Fatty Acid Ratios on the Hepatic Transcriptome, and Association with Phenotypic Traits (Growth, Somatic Indices, and Tissue Lipid Composition), in Atlantic Salmon (Salmo salar)
	Katan T, Xue X, Caballero-Solares A, Taylor RG, Parrish CC & Rise ML (2021) Influence of Varying Dietary ω6 to ω3 Fatty Acid Ratios on the Hepatic Transcriptome, and Association with Phenotypic Traits (Growth, Somatic Indices, and Tissue Lipid Composition), in Atlantic Salmon (Salmo salar). Biology, 10 (7), Art. No.: 578. https://doi.org/10.3390/biology10070578
	
			
     Article 
    Transcriptome Profiling of Atlantic Salmon (Salmo salar) Parr With Higher and Lower Pathogen Loads Following Piscirickettsia salmonis Infection
	Xue X, Caballero-Solares A, Hall J, Umasuthan N, Kumar S, Jakob E, Skugor S, Hawes C, Santander J, Taylor RG & Rise ML (2021) Transcriptome Profiling of Atlantic Salmon (Salmo salar) Parr With Higher and Lower Pathogen Loads Following Piscirickettsia salmonis Infection. Frontiers in Immunology, 12. https://doi.org/10.3389/fimmu.2021.789465
	
			
     Article 
    Effects of Varying Dietary Docosahexaenoic, Eicosapentaenoic, Linoleic, and α-Linolenic Acid Levels on Fatty Acid Composition of Phospholipids and Neutral Lipids in the Liver of Atlantic Salmon, Salmo salar
	Mohammad Ali Jalali S, Parrish CC, Caballero-Solares A, Rise ML & Taylor RG (2021) Effects of Varying Dietary Docosahexaenoic, Eicosapentaenoic, Linoleic, and α-Linolenic Acid Levels on Fatty Acid Composition of Phospholipids and Neutral Lipids in the Liver of Atlantic Salmon, Salmo salar. Journal of Agricultural and Food Chemistry, 69 (9), pp. 2697-2710. https://doi.org/10.1021/acs.jafc.0c05182
	
			
     Article 
    Influence of Dietary Long-Chain Polyunsaturated Fatty Acids and ω6 to ω3 Ratios on Head Kidney Lipid Composition and Expression of Fatty Acid and Eicosanoid Metabolism Genes in Atlantic Salmon (Salmo salar)
	Katan T, Xue X, Caballero-Solares A, Taylor RG, Rise ML & Parrish CC (2020) Influence of Dietary Long-Chain Polyunsaturated Fatty Acids and ω6 to ω3 Ratios on Head Kidney Lipid Composition and Expression of Fatty Acid and Eicosanoid Metabolism Genes in Atlantic Salmon (Salmo salar). Frontiers in Molecular Biosciences, 7. https://doi.org/10.3389/fmolb.2020.602587
	
			
     Article 
    Transcriptomic Profiling in Fins of Atlantic Salmon Parasitized with Sea Lice: Evidence for an Early Imbalance Between Chalimus-Induced Immunomodulation and the Host’s Defense Response
	Umasuthan N, Xue X, Caballero-Solares A, Kumar S, Westcott JD, Chen Z, Fast MD, Skugor S, Nowak BF, Rise ML & Taylor RG (2020) Transcriptomic Profiling in Fins of Atlantic Salmon Parasitized with Sea Lice: Evidence for an Early Imbalance Between Chalimus-Induced Immunomodulation and the Host’s Defense Response. International Journal of Molecular Sciences, 21 (7), p. 2417. https://doi.org/10.3390/ijms21072417
	
			
     Article 
    Diet-Induced Physiological Responses in the Liver of Atlantic Salmon (Salmo salar) Inferred Using Multiplex PCR Platforms
	Caballero-Solares A, Xue X, Cleveland BM, Foroutani MB, Parrish CC, Taylor RG & Rise ML (2020) Diet-Induced Physiological Responses in the Liver of Atlantic Salmon (Salmo salar) Inferred Using Multiplex PCR Platforms. Marine Biotechnology, 22, pp. 511-525. https://doi.org/10.1007/s10126-020-09972-5
	
			
     Article 
    Transcriptomic Profiling of the Adaptive and Innate Immune Responses of Atlantic Salmon to Renibacterium salmoninarum Infection
	Eslamloo K, Caballero-Solares A, Inkpen SM, Emam M, Kumar S, Bouniot C, Avendaño-Herrera R, Jakob E & Rise ML (2020) Transcriptomic Profiling of the Adaptive and Innate Immune Responses of Atlantic Salmon to Renibacterium salmoninarum Infection. Frontiers in Immunology, 11. https://doi.org/10.3389/fimmu.2020.567838
	
			
     Article 
    Interaction between            ω            6 and            ω            3 fatty acids of different chain lengths regulates Atlantic salmon hepatic gene expression and muscle fatty acid profiles
	Emam M, Katan T, Caballero-Solares A, Taylor RG, Parrish KS, Rise ML & Parrish CC (2020) Interaction between            ω            6 and            ω            3 fatty acids of different chain lengths regulates Atlantic salmon hepatic gene expression and muscle fatty acid profiles. Philosophical Transactions of the Royal Society B: Biological Sciences, 375 (1804), Art. No.: 20190648. https://doi.org/10.1098/rstb.2019.0648
	
			
     Article 
    Liver Transcriptome Profiling Reveals That Dietary DHA and EPA Levels Influence Suites of Genes Involved in Metabolism, Redox Homeostasis, and Immune Function in Atlantic Salmon (Salmo salar)
	Xue X, Hall JR, Caballero-Solares A, Eslamloo K, Taylor RG, Parrish CC & Rise M (2020) Liver Transcriptome Profiling Reveals That Dietary DHA and EPA Levels Influence Suites of Genes Involved in Metabolism, Redox Homeostasis, and Immune Function in Atlantic Salmon (Salmo salar). Marine Biotechnology, 22, pp. 263-284. https://doi.org/10.1007/s10126-020-09950-x
	
			
     Article 
    Profiling the transcriptome response of Atlantic salmon head kidney to formalin-killed Renibacterium salmoninarum
	Eslamloo K, Kumar S, Caballero-Solares A, Gnanagobal H, Santander J & Rise ML (2020) Profiling the transcriptome response of Atlantic salmon head kidney to formalin-killed Renibacterium salmoninarum. Fish & Shellfish Immunology, 98, pp. 937-949. https://doi.org/10.1016/j.fsi.2019.11.057
	
			
     Article 
    Impact of rearing temperature on the innate antiviral immune response of growth hormone transgenic female triploid Atlantic salmon (Salmo salar)
	Ignatz EH, Braden LM, Benfey TJ, Caballero-Solares A, Hori TS, Runighan CD, Fast MD, Westcott JD & Rise ML (2020) Impact of rearing temperature on the innate antiviral immune response of growth hormone transgenic female triploid Atlantic salmon (Salmo salar). Fish & Shellfish Immunology, 97, pp. 656-668. https://doi.org/10.1016/j.fsi.2019.12.081
	
			
     Article 
    Dietary Immunostimulant CpG Modulates MicroRNA Biomarkers Associated with Immune Responses in Atlantic Salmon (Salmo salar)
	Xue X, Woldemariam NT, Caballero-Solares A, Umasuthan N, Fast MD, Taylor RG, Rise ML & Andreassen R (2019) Dietary Immunostimulant CpG Modulates MicroRNA Biomarkers Associated with Immune Responses in Atlantic Salmon (Salmo salar). Cells, 8 (12), p. 1592. https://doi.org/10.3390/cells8121592
	
			
     Article 
    Effect of plant-based diets with varying ratios of ω6 to ω3 fatty acids on growth performance, tissue composition, fatty acid biosynthesis and lipid-related gene expression in Atlantic salmon (Salmo salar)
	Katan T, Caballero-Solares A, Taylor RG, Rise ML & Parrish CC (2019) Effect of plant-based diets with varying ratios of ω6 to ω3 fatty acids on growth performance, tissue composition, fatty acid biosynthesis and lipid-related gene expression in Atlantic salmon (Salmo salar). Comparative Biochemistry and Physiology Part D: Genomics and Proteomics, 30, pp. 290-304. https://doi.org/10.1016/j.cbd.2019.03.004
	
			
     Article 
    Changes in the liver transcriptome of farmed Atlantic salmon (Salmo salar) fed experimental diets based on terrestrial alternatives to fish meal and fish oil
	Caballero-Solares A, Xue X, Parrish CC, Foroutani MB, Taylor RG & Rise ML (2018) Changes in the liver transcriptome of farmed Atlantic salmon (Salmo salar) fed experimental diets based on terrestrial alternatives to fish meal and fish oil. BMC Genomics, 19, Art. No.: 796. https://doi.org/10.1186/s12864-018-5188-6
	
			
     Article 
    A transcriptomic approach to study the effect of long-term starvation and diet composition on the expression of mitochondrial oxidative phosphorylation genes in gilthead sea bream (Sparus aurata)
	Silva-Marrero JI, Sáez A, Caballero-Solares A, Viegas I, Almajano MP, Fernández F, Baanante IV & Metón I (2017) A transcriptomic approach to study the effect of long-term starvation and diet composition on the expression of mitochondrial oxidative phosphorylation genes in gilthead sea bream (Sparus aurata). BMC Genomics, 18 (1). https://doi.org/10.1186/s12864-017-4148-x
	
			
     Article 
    Transcriptome profiling of antiviral immune and dietary fatty acid dependent responses of Atlantic salmon macrophage-like cells
	Eslamloo K, Xue X, Hall JR, Smith NC, Caballero-Solares A, Parrish CC, Taylor RG & Rise ML (2017) Transcriptome profiling of antiviral immune and dietary fatty acid dependent responses of Atlantic salmon macrophage-like cells. BMC Genomics, 18, Art. No.: 706. https://doi.org/10.1186/s12864-017-4099-2
	
			
     Article 
    The dietary replacement of marine ingredients by terrestrial animal and plant alternatives modulates the antiviral immune response of Atlantic salmon ( Salmo salar )
	Caballero-Solares A, Hall JR, Xue X, Eslamloo K, Taylor RG, Parrish CC & Rise ML (2017) The dietary replacement of marine ingredients by terrestrial animal and plant alternatives modulates the antiviral immune response of Atlantic salmon ( Salmo salar ). Fish & Shellfish Immunology, 64, pp. 24-38. https://doi.org/10.1016/j.fsi.2017.02.040
	
			
     Article 
    Effect of dietary macronutrients on the expression of cholecystokinin, leptin, ghrelin and neuropeptide Y in gilthead sea bream ( Sparus aurata )
	Babaei S, Sáez A, Caballero-Solares A, Fernández F, Baanante IV & Metón I (2017) Effect of dietary macronutrients on the expression of cholecystokinin, leptin, ghrelin and neuropeptide Y in gilthead sea bream ( Sparus aurata ). General and Comparative Endocrinology, 240, pp. 121-128. https://doi.org/10.1016/j.ygcen.2016.10.003
	
			
     Article 
    Chitosan-Mediated shRNA Knockdown of Cytosolic Alanine Aminotransferase Improves Hepatic Carbohydrate Metabolism
	González JD, Silva-Marrero JI, Metón I, Caballero-Solares A, Viegas I, Fernández F, Miñarro M, Fàbregas A, Ticó JR, Jones JG & Baanante IV (2016) Chitosan-Mediated shRNA Knockdown of Cytosolic Alanine Aminotransferase Improves Hepatic Carbohydrate Metabolism. Marine Biotechnology, 18 (1), pp. 85-97. https://doi.org/10.1007/s10126-015-9670-8
	
			
     Article 
    Diets supplemented with glutamate or glutamine improve protein retention and modulate gene expression of key enzymes of hepatic metabolism in gilthead seabream (Sparus aurata) juveniles
	Caballero-Solares A, Viegas I, Salgado MC, Siles AM, Sáez A, Metón I, Baanante IV & Fernández F (2015) Diets supplemented with glutamate or glutamine improve protein retention and modulate gene expression of key enzymes of hepatic metabolism in gilthead seabream (Sparus aurata) juveniles. Aquaculture, 444, pp. 79-87. https://doi.org/10.1016/j.aquaculture.2015.03.025
	
			
     Article 
    Contribution of dietary starch to hepatic and systemic carbohydrate fluxes in European seabass (Dicentrarchus labraxL.)
	Viegas I, Rito J, Jarak I, Leston S, Caballero-Solares A, Metón I, Pardal MA, Baanante IV & Jones JG (2015) Contribution of dietary starch to hepatic and systemic carbohydrate fluxes in European seabass (Dicentrarchus labraxL.). British Journal of Nutrition, 113 (9), pp. 1345-1354. https://doi.org/10.1017/s0007114515000574
	
			
     Article 
    Expressional regulation of key hepatic enzymes of intermediary metabolism in European seabass (Dicentrarchus labrax) during food deprivation and refeeding
	Viegas I, Caballero-Solares A, Rito J, Giralt M, Pardal MA, Metón I, Jones JG & Baanante IV (2014) Expressional regulation of key hepatic enzymes of intermediary metabolism in European seabass (Dicentrarchus labrax) during food deprivation and refeeding. Comparative Biochemistry and Physiology Part A: Molecular & Integrative Physiology, 174, pp. 38-44. https://doi.org/10.1016/j.cbpa.2014.04.004
	
			
     Article 
    Effects of alanine aminotransferase inhibition on the intermediary metabolism inSparus auratathrough dietary amino-oxyacetate supplementation
	González JD, Caballero A, Viegas I, Metón I, Jones JG, Barra J, Fernández F & Baanante IV (2012) Effects of alanine aminotransferase inhibition on the intermediary metabolism inSparus auratathrough dietary amino-oxyacetate supplementation. British Journal of Nutrition, 107 (12), pp. 1747-1756. https://doi.org/10.1017/s000711451100496x